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sympatric speciation simulation symsim  (MathWorks Inc)


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    MathWorks Inc sympatric speciation simulation symsim
    (A, B, C) Weak selection. (D, E, F) Strong selection. (A, D) Probability of appearance ( p ) of the derived (niche 1) optimal genotype in 100 replicate simulations for each combination of the number of loci involved in niche adaptation, L and the recombination rate, r . High probabilities ( p = 1) are shown in white, low probabilities in black, and intermediate probabilities in grey scale. The space under the red line indicates extinction of the niche-1 optimal genotype in all 100 replicates ( p <0.01). (B, E) Time to appearance of the niche 1 optimal genotype (mean over 100 replicate simulations). The red line is the same as in (A); n.d. refers to appearance time not determined, or effectively infinite, because extinction of niche-1 alleles occurred before the optimal genotype could appear. Shorter times are shown in white, effectively infinite times in black, and intermediate times in grey scale. (C, F) Completeness of <t>speciation.</t> The mean fraction of the pooled populations (niche 0 and 1) occupied by optimally-adapted genotypes is based on 10 replicate simulations for every combination of L and r . Complete speciation (optimal genotype fraction near 1) shown in white, incomplete in black, and intermediate completeness in grey scale. Magenta letters in C refer to the same simulations depicted in panels (A, B, C, D) of .
    Sympatric Speciation Simulation Symsim, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/sympatric speciation simulation symsim/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    sympatric speciation simulation symsim - by Bioz Stars, 2026-05
    90/100 stars

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    1) Product Images from "Sympatric Speciation: When Is It Possible in Bacteria?"

    Article Title: Sympatric Speciation: When Is It Possible in Bacteria?

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0053539

    (A, B, C) Weak selection. (D, E, F) Strong selection. (A, D) Probability of appearance ( p ) of the derived (niche 1) optimal genotype in 100 replicate simulations for each combination of the number of loci involved in niche adaptation, L and the recombination rate, r . High probabilities ( p = 1) are shown in white, low probabilities in black, and intermediate probabilities in grey scale. The space under the red line indicates extinction of the niche-1 optimal genotype in all 100 replicates ( p <0.01). (B, E) Time to appearance of the niche 1 optimal genotype (mean over 100 replicate simulations). The red line is the same as in (A); n.d. refers to appearance time not determined, or effectively infinite, because extinction of niche-1 alleles occurred before the optimal genotype could appear. Shorter times are shown in white, effectively infinite times in black, and intermediate times in grey scale. (C, F) Completeness of speciation. The mean fraction of the pooled populations (niche 0 and 1) occupied by optimally-adapted genotypes is based on 10 replicate simulations for every combination of L and r . Complete speciation (optimal genotype fraction near 1) shown in white, incomplete in black, and intermediate completeness in grey scale. Magenta letters in C refer to the same simulations depicted in panels (A, B, C, D) of .
    Figure Legend Snippet: (A, B, C) Weak selection. (D, E, F) Strong selection. (A, D) Probability of appearance ( p ) of the derived (niche 1) optimal genotype in 100 replicate simulations for each combination of the number of loci involved in niche adaptation, L and the recombination rate, r . High probabilities ( p = 1) are shown in white, low probabilities in black, and intermediate probabilities in grey scale. The space under the red line indicates extinction of the niche-1 optimal genotype in all 100 replicates ( p <0.01). (B, E) Time to appearance of the niche 1 optimal genotype (mean over 100 replicate simulations). The red line is the same as in (A); n.d. refers to appearance time not determined, or effectively infinite, because extinction of niche-1 alleles occurred before the optimal genotype could appear. Shorter times are shown in white, effectively infinite times in black, and intermediate times in grey scale. (C, F) Completeness of speciation. The mean fraction of the pooled populations (niche 0 and 1) occupied by optimally-adapted genotypes is based on 10 replicate simulations for every combination of L and r . Complete speciation (optimal genotype fraction near 1) shown in white, incomplete in black, and intermediate completeness in grey scale. Magenta letters in C refer to the same simulations depicted in panels (A, B, C, D) of .

    Techniques Used: Selection, Derivative Assay



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    sympatric speciation simulation symsim  (MathWorks Inc)
    90
    MathWorks Inc sympatric speciation simulation symsim
    (A, B, C) Weak selection. (D, E, F) Strong selection. (A, D) Probability of appearance ( p ) of the derived (niche 1) optimal genotype in 100 replicate simulations for each combination of the number of loci involved in niche adaptation, L and the recombination rate, r . High probabilities ( p = 1) are shown in white, low probabilities in black, and intermediate probabilities in grey scale. The space under the red line indicates extinction of the niche-1 optimal genotype in all 100 replicates ( p <0.01). (B, E) Time to appearance of the niche 1 optimal genotype (mean over 100 replicate simulations). The red line is the same as in (A); n.d. refers to appearance time not determined, or effectively infinite, because extinction of niche-1 alleles occurred before the optimal genotype could appear. Shorter times are shown in white, effectively infinite times in black, and intermediate times in grey scale. (C, F) Completeness of <t>speciation.</t> The mean fraction of the pooled populations (niche 0 and 1) occupied by optimally-adapted genotypes is based on 10 replicate simulations for every combination of L and r . Complete speciation (optimal genotype fraction near 1) shown in white, incomplete in black, and intermediate completeness in grey scale. Magenta letters in C refer to the same simulations depicted in panels (A, B, C, D) of .
    Sympatric Speciation Simulation Symsim, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/sympatric speciation simulation symsim/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    sympatric speciation simulation symsim - by Bioz Stars, 2026-05
    90/100 stars
    		  Buy from Supplier

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    (A, B, C) Weak selection. (D, E, F) Strong selection. (A, D) Probability of appearance ( p ) of the derived (niche 1) optimal genotype in 100 replicate simulations for each combination of the number of loci involved in niche adaptation, L and the recombination rate, r . High probabilities ( p = 1) are shown in white, low probabilities in black, and intermediate probabilities in grey scale. The space under the red line indicates extinction of the niche-1 optimal genotype in all 100 replicates ( p <0.01). (B, E) Time to appearance of the niche 1 optimal genotype (mean over 100 replicate simulations). The red line is the same as in (A); n.d. refers to appearance time not determined, or effectively infinite, because extinction of niche-1 alleles occurred before the optimal genotype could appear. Shorter times are shown in white, effectively infinite times in black, and intermediate times in grey scale. (C, F) Completeness of speciation. The mean fraction of the pooled populations (niche 0 and 1) occupied by optimally-adapted genotypes is based on 10 replicate simulations for every combination of L and r . Complete speciation (optimal genotype fraction near 1) shown in white, incomplete in black, and intermediate completeness in grey scale. Magenta letters in C refer to the same simulations depicted in panels (A, B, C, D) of .

    Journal: PLoS ONE

    Article Title: Sympatric Speciation: When Is It Possible in Bacteria?

    doi: 10.1371/journal.pone.0053539

    Figure Lengend Snippet: (A, B, C) Weak selection. (D, E, F) Strong selection. (A, D) Probability of appearance ( p ) of the derived (niche 1) optimal genotype in 100 replicate simulations for each combination of the number of loci involved in niche adaptation, L and the recombination rate, r . High probabilities ( p = 1) are shown in white, low probabilities in black, and intermediate probabilities in grey scale. The space under the red line indicates extinction of the niche-1 optimal genotype in all 100 replicates ( p <0.01). (B, E) Time to appearance of the niche 1 optimal genotype (mean over 100 replicate simulations). The red line is the same as in (A); n.d. refers to appearance time not determined, or effectively infinite, because extinction of niche-1 alleles occurred before the optimal genotype could appear. Shorter times are shown in white, effectively infinite times in black, and intermediate times in grey scale. (C, F) Completeness of speciation. The mean fraction of the pooled populations (niche 0 and 1) occupied by optimally-adapted genotypes is based on 10 replicate simulations for every combination of L and r . Complete speciation (optimal genotype fraction near 1) shown in white, incomplete in black, and intermediate completeness in grey scale. Magenta letters in C refer to the same simulations depicted in panels (A, B, C, D) of .

    Article Snippet: Our sympatric speciation simulation ( symsim , implemented in MatLab and available at http://almlab.mit.edu/symsim.html ) models a microbial population growing in an environment composed of two distinct niches, one ancestral (niche 0) and one derived (niche 1).

    Techniques: Selection, Derivative Assay